CRISPRone

CRISPRone report for GCA_001024775.1_ASM102477v1

♦ Seq 1: LDMN01000047.1 Pseudomonas aeruginosa strain Pae_CF67.05e CF67.05e_contig_47, whole genome shotgun sequence

⇒Summary: seq-len = 63235 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62285-62913 bp Zoom in on locus 1 x11 CRISPR array Location: 62285-62913 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 62285-62913 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62285-62913 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDMN01000060.1 Pseudomonas aeruginosa strain Pae_CF67.05e CF67.05e_contig_60, whole genome shotgun sequence

⇒Summary: seq-len = 49640 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-11506 bp Zoom in on locus 1 x17 x27 CRISPR array Location: 0-988 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 0-988 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 1248-2222 bp Gene: COG1203:cas3 Type: Type-I Location: 2219-5449 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5860-7161 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7148-8131 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8142-9170 bp Gene: cd09739:cas6f Type: other Location: 9174-9737 bp CRISPR array Location: 9922-11506 bp Num of repeats: 27 Spacers: s17-s42 CRISPR array Location: 9922-11506 bp Num of repeats: 27 Spacers: s17-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-988 bp]: array | spacers
           [Locus range 9922-11506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)