CRISPRone

CRISPRone report for GCA_001024805.1_ASM102480v1

♦ Seq 1: LDMO01000048.1 Pseudomonas aeruginosa strain Pae_CF67.05f CF67.05f_contig_48, whole genome shotgun sequence

⇒Summary: seq-len = 39123 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-989 bp Zoom in on locus 1 x17 CRISPR array Location: 1-989 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 1-989 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-989 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDMO01000049.1 Pseudomonas aeruginosa strain Pae_CF67.05f CF67.05f_contig_49, whole genome shotgun sequence

⇒Summary: seq-len = 63229 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62279-62907 bp Zoom in on locus 1 x11 CRISPR array Location: 62279-62907 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 62279-62907 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62279-62907 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LDMO01000083.1 Pseudomonas aeruginosa strain Pae_CF67.05f CF67.05f_contig_83, whole genome shotgun sequence

⇒Summary: seq-len = 8959 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 280-8751 bp Zoom in on locus 1 Gene: cd09718:cas1 Type: universal Location: 280-1254 bp Gene: COG1203:cas3 Type: Type-I Location: 1251-4481 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4892-6193 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6180-7163 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7174-8184 bp Gene: cd09739:cas6f Type: other Location: 8188-8751 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)