CRISPRone

CRISPRone report for GCA_001024845.1_ASM102484v1

♦ Seq 1: LDMQ01000001.1 Pseudomonas aeruginosa strain Pae_CF67.05h CF67.05h_contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 71758 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21757-33624 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 21757-23106 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 21757-23106 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 23366-24340 bp Gene: COG1203:cas3 Type: Type-I Location: 24337-27567 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27978-29279 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29266-30249 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30260-31288 bp Gene: cd09739:cas6f Type: other Location: 31292-31855 bp CRISPR array Location: 32040-33624 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 32040-33624 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21757-23106 bp]: array | spacers
           [Locus range 32040-33624 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDMQ01000048.1 Pseudomonas aeruginosa strain Pae_CF67.05h CF67.05h_contig_48, whole genome shotgun sequence

⇒Summary: seq-len = 129290 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66353-66982 bp Zoom in on locus 1 x11 CRISPR array Location: 66353-66982 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 66353-66982 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 66353-66982 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)