CRISPRone

CRISPRone report for GCA_001024855.1_ASM102485v1

♦ Seq 1: LDMR01000025.1 Pseudomonas aeruginosa strain Pae_CF67.05i CF67.05i_contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 400163 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 337227-337856 bp Zoom in on locus 1 x11 CRISPR array Location: 337227-337856 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 337227-337856 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 337227-337856 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDMR01000053.1 Pseudomonas aeruginosa strain Pae_CF67.05i CF67.05i_contig_53, whole genome shotgun sequence

⇒Summary: seq-len = 36734 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3297-15164 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 3297-4882 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 3297-4882 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 5066-5629 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 5633-6661 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6672-7655 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7642-8943 bp Gene: COG1203:cas3 Type: Type-I Location: 9354-12584 bp Gene: cd09718:cas1 Type: universal Location: 12581-13555 bp CRISPR array Location: 13816-15164 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 13816-15164 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3297-4882 bp]: array | spacers
           [Locus range 13816-15164 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)