CRISPRone

CRISPRone report for GCA_001028745.1_RN21

♦ Seq 1: CGFY01000008.1 Pseudomonas aeruginosa genome assembly RN21, contig RN21_contig8, whole genome shotgun sequence

⇒Summary: seq-len = 843429 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 284546-295131 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 284546-285415 bp Gene: pfam00078:RT Type: other Location: 290324-291592 bp Gene: unk Type: unknown Location: 291742-292140 bp Gene: unk Type: unknown Location: 292324-292503 bp Gene: cls000170:cas4 Type: Type-I Location: 293587-295131 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CGFY01000066.1 Pseudomonas aeruginosa genome assembly RN21, contig RN21_contig66, whole genome shotgun sequence

⇒Summary: seq-len = 56374 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40091-50602 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 40091-40852 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 40091-40852 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 40917-41216 bp Gene: cd09719:cas1 Type: universal Location: 41213-42103 bp Gene: pfam08798:cas6e Type: other Location: 42130-42669 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 42716-43378 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 43380-44522 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 44532-45062 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 45059-46627 bp Gene: cd09641:cas3HD Type: Type-I Location: 46630-49311 bp CRISPR array Location: 50085-50602 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 50085-50602 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40091-40852 bp]: array | spacers
           [Locus range 50085-50602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)