CRISPRone

CRISPRone report for GCA_001034695.1_ASM103469v1

♦ Seq 1: LEFQ01000169.1 Pseudomonas aeruginosa strain Pae_CF67.06t CF67.06t_contig_169, whole genome shotgun sequence

⇒Summary: seq-len = 26700 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-627 bp Zoom in on locus 1 x7 x3 CRISPR array Location: 0-376 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-376 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 480-627 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 480-627 bp Num of repeats: 3 Spacers: s7-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-376 bp]: array | spacers
           [Locus range 480-627 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEFQ01000158.1 Pseudomonas aeruginosa strain Pae_CF67.06t CF67.06t_contig_158, whole genome shotgun sequence

⇒Summary: seq-len = 11306 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-11306 bp Zoom in on locus 1 x18 x23 CRISPR array Location: 0-1034 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 0-1034 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 1218-1781 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1785-2813 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2824-3807 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3794-5095 bp Gene: COG1203:cas3 Type: Type-I Location: 5496-8726 bp Gene: cd09718:cas1 Type: universal Location: 8723-9697 bp CRISPR array Location: 9958-11306 bp Num of repeats: 23 Spacers: s18-s39 CRISPR array Location: 9958-11306 bp Num of repeats: 23 Spacers: s18-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-1034 bp]: array | spacers
           [Locus range 9958-11306 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LEFQ01000287.1 Pseudomonas aeruginosa strain Pae_CF67.06t CF67.06t_contig_287, whole genome shotgun sequence

⇒Summary: seq-len = 509 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-510 bp Zoom in on locus 1 x9 CRISPR array Location: 1-510 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1-510 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-510 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)