CRISPRone

CRISPRone report for GCA_001034835.1_ASM103483v1

♦ Seq 1: LEGD01000033.1 Pseudomonas aeruginosa strain Pae_CF67.07m CF67.07m_contig_33, whole genome shotgun sequence

⇒Summary: seq-len = 394267 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31507-32135 bp Zoom in on locus 1 x11 CRISPR array Location: 31507-32135 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 31507-32135 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31507-32135 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEGD01000006.1 Pseudomonas aeruginosa strain Pae_CF67.07m CF67.07m_contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 61328 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21846-33713 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 21846-23195 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 21846-23195 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 23455-24429 bp Gene: COG1203:cas3 Type: Type-I Location: 24426-27656 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28067-29368 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29355-30338 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30349-31377 bp Gene: cd09739:cas6f Type: other Location: 31381-31944 bp CRISPR array Location: 32129-33713 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 32129-33713 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21846-23195 bp]: array | spacers
           [Locus range 32129-33713 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)