CRISPRone

CRISPRone report for GCA_001034945.1_ASM103494v1

♦ Seq 1: LEGO01000024.1 Pseudomonas aeruginosa strain Pae_CF67.08d CF67.08d_contig_24, whole genome shotgun sequence

⇒Summary: seq-len = 42982 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25882-37632 bp Zoom in on locus 1 x25 x23 CRISPR array Location: 25882-27347 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 25882-27347 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09739:cas6f Type: other Location: 27531-28094 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28098-29126 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29137-30120 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 30107-31408 bp Gene: COG1203:cas3 Type: Type-I Location: 31822-35052 bp Gene: cd09718:cas1 Type: universal Location: 35049-36023 bp CRISPR array Location: 36284-37632 bp Num of repeats: 23 Spacers: s25-s46 CRISPR array Location: 36284-37632 bp Num of repeats: 23 Spacers: s25-s46 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25882-27347 bp]: array | spacers
           [Locus range 36284-37632 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEGO01000088.1 Pseudomonas aeruginosa strain Pae_CF67.08d CF67.08d_contig_88, whole genome shotgun sequence

⇒Summary: seq-len = 30817 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30610-30817 bp Zoom in on locus 1 x4 CRISPR array Location: 30610-30817 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 30610-30817 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30610-30817 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)