CRISPRone

CRISPRone report for GCA_001035115.1_ASM103511v1

♦ Seq 1: LEGX01000054.1 Pseudomonas aeruginosa strain Pae_CF67.08m CF67.08m_contig_54, whole genome shotgun sequence

⇒Summary: seq-len = 21279 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75-704 bp Zoom in on locus 1 x11 CRISPR array Location: 75-704 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 75-704 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 75-704 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEGX01000045.1 Pseudomonas aeruginosa strain Pae_CF67.08m CF67.08m_contig_45, whole genome shotgun sequence

⇒Summary: seq-len = 50000 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75-11882 bp Zoom in on locus 1 x23 x26 CRISPR array Location: 75-1424 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 75-1424 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1684-2658 bp Gene: COG1203:cas3 Type: Type-I Location: 2655-5885 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6296-7597 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7584-8567 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8578-9606 bp Gene: cd09739:cas6f Type: other Location: 9610-10173 bp CRISPR array Location: 10358-11882 bp Num of repeats: 26 Spacers: s23-s47 CRISPR array Location: 10358-11882 bp Num of repeats: 26 Spacers: s23-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 75-1424 bp]: array | spacers
           [Locus range 10358-11882 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)