CRISPRone

CRISPRone report for GCA_001035465.1_ASM103546v1

♦ Seq 1: LEHO01000037.1 Pseudomonas aeruginosa strain Pae_CF67.09j CF67.09j_contig_37, whole genome shotgun sequence

⇒Summary: seq-len = 509 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 177-506 bp Zoom in on locus 1 x6 CRISPR array Location: 177-506 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 177-506 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 177-506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEHO01000044.1 Pseudomonas aeruginosa strain Pae_CF67.09j CF67.09j_contig_44, whole genome shotgun sequence

⇒Summary: seq-len = 37392 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 209-10187 bp Zoom in on locus 1 x21 Gene: cd09739:cas6f Type: other Location: 209-772 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 776-1804 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1815-2798 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2785-4086 bp Gene: COG1203:cas3 Type: Type-I Location: 4497-7727 bp Gene: cd09718:cas1 Type: universal Location: 7724-8698 bp CRISPR array Location: 8959-10187 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 8959-10187 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8959-10187 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)