CRISPRone

CRISPRone report for GCA_001035605.1_ASM103560v1

♦ Seq 1: LEHV01000035.1 Pseudomonas aeruginosa strain Pae_CF67.09q CF67.09q_contig_35, whole genome shotgun sequence

⇒Summary: seq-len = 10632 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 322-10420 bp Zoom in on locus 1 x23 CRISPR array Location: 322-1671 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 322-1671 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1931-2905 bp Gene: COG1203:cas3 Type: Type-I Location: 2902-6132 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6543-7844 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7831-8814 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8825-9853 bp Gene: cd09739:cas6f Type: other Location: 9857-10420 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 322-1671 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEHV01000067.1 Pseudomonas aeruginosa strain Pae_CF67.09q CF67.09q_contig_67, whole genome shotgun sequence

⇒Summary: seq-len = 328 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-328 bp Zoom in on locus 1 x3 x2 CRISPR array Location: 0-138 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-138 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 241-328 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 241-328 bp Num of repeats: 2 Spacers: s3-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-138 bp]: array | spacers
           [Locus range 241-328 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)