CRISPRone

CRISPRone report for GCA_001035635.1_ASM103563v1

♦ Seq 1: LEHX01000036.1 Pseudomonas aeruginosa strain Pae_CF67.09s CF67.09s_contig_36, whole genome shotgun sequence

⇒Summary: seq-len = 71306 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21305-33172 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 21305-22654 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 21305-22654 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 22914-23888 bp Gene: COG1203:cas3 Type: Type-I Location: 23885-27115 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27526-28827 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28814-29797 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29808-30836 bp Gene: cd09739:cas6f Type: other Location: 30840-31403 bp CRISPR array Location: 31588-33172 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 31588-33172 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21305-22654 bp]: array | spacers
           [Locus range 31588-33172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEHX01000030.1 Pseudomonas aeruginosa strain Pae_CF67.09s CF67.09s_contig_30, whole genome shotgun sequence

⇒Summary: seq-len = 255402 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62311-62939 bp Zoom in on locus 1 x11 CRISPR array Location: 62311-62939 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 62311-62939 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62311-62939 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)