CRISPRone

CRISPRone report for GCA_001035685.1_ASM103568v1

♦ Seq 1: LEHZ01000024.1 Pseudomonas aeruginosa strain Pae_CF67.10a CF67.10a_contig_24, whole genome shotgun sequence

⇒Summary: seq-len = 50949 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38972-50839 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 38972-40557 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 38972-40557 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 40741-41304 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 41308-42336 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 42347-43330 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 43317-44618 bp Gene: COG1203:cas3 Type: Type-I Location: 45029-48259 bp Gene: cd09718:cas1 Type: universal Location: 48256-49230 bp CRISPR array Location: 49491-50839 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 49491-50839 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38972-40557 bp]: array | spacers
           [Locus range 49491-50839 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEHZ01000002.1 Pseudomonas aeruginosa strain Pae_CF67.10a CF67.10a_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 207933 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111-740 bp Zoom in on locus 1 x11 CRISPR array Location: 111-740 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 111-740 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111-740 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)