CRISPRone

CRISPRone report for GCA_001035705.1_ASM103570v1

♦ Seq 1: LEIA01000017.1 Pseudomonas aeruginosa strain Pae_CF67.10b CF67.10b_contig_17, whole genome shotgun sequence

⇒Summary: seq-len = 111787 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111-740 bp Zoom in on locus 1 x11 CRISPR array Location: 111-740 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 111-740 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111-740 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEIA01000054.1 Pseudomonas aeruginosa strain Pae_CF67.10b CF67.10b_contig_54, whole genome shotgun sequence

⇒Summary: seq-len = 50112 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38135-50002 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 38135-39720 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 38135-39720 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 39904-40467 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40471-41499 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41510-42493 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42480-43781 bp Gene: COG1203:cas3 Type: Type-I Location: 44192-47422 bp Gene: cd09718:cas1 Type: universal Location: 47419-48393 bp CRISPR array Location: 48654-50002 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 48654-50002 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38135-39720 bp]: array | spacers
           [Locus range 48654-50002 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)