CRISPRone

CRISPRone report for GCA_001035795.1_ASM103579v1

♦ Seq 1: LEIF01000019.1 Pseudomonas aeruginosa strain Pae_CF67.10g CF67.10g_contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 71908 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38135-49922 bp Zoom in on locus 1 x5 x19 x23 CRISPR array Location: 38135-38403 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 38135-38403 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 38535-39640 bp Num of repeats: 19 Spacers: s5-s22 CRISPR array Location: 38535-39640 bp Num of repeats: 19 Spacers: s5-s22 Gene: cd09739:cas6f Type: other Location: 39824-40387 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40391-41419 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41430-42413 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42400-43701 bp Gene: COG1203:cas3 Type: Type-I Location: 44112-47342 bp Gene: cd09718:cas1 Type: universal Location: 47339-48313 bp CRISPR array Location: 48574-49922 bp Num of repeats: 23 Spacers: s23-s44 CRISPR array Location: 48574-49922 bp Num of repeats: 23 Spacers: s23-s44 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38135-38403 bp]: array | spacers
           [Locus range 38535-39640 bp]: array | spacers
           [Locus range 48574-49922 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEIF01000004.1 Pseudomonas aeruginosa strain Pae_CF67.10g CF67.10g_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 771676 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 351782-352411 bp Zoom in on locus 1 x11 CRISPR array Location: 351782-352411 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 351782-352411 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 351782-352411 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)