CRISPRone

CRISPRone report for GCA_001035955.1_ASM103595v1

♦ Seq 1: LEIN01000014.1 Pseudomonas aeruginosa strain Pae_CF67.10o CF67.10o_contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 162163 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112162-124029 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 112162-113511 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 112162-113511 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 113771-114745 bp Gene: COG1203:cas3 Type: Type-I Location: 114742-117972 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 118383-119684 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 119671-120654 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 120665-121693 bp Gene: cd09739:cas6f Type: other Location: 121697-122260 bp CRISPR array Location: 122445-124029 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 122445-124029 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 112162-113511 bp]: array | spacers
           [Locus range 122445-124029 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEIN01000059.1 Pseudomonas aeruginosa strain Pae_CF67.10o CF67.10o_contig_59, whole genome shotgun sequence

⇒Summary: seq-len = 1197 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-216 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 1-216 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LEIN01000007.1 Pseudomonas aeruginosa strain Pae_CF67.10o CF67.10o_contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 487595 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 382372-383001 bp Zoom in on locus 1 x11 CRISPR array Location: 382372-383001 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 382372-383001 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 382372-383001 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)