CRISPRone

CRISPRone report for GCA_001036005.1_ASM103600v1

♦ Seq 1: LEIP01000015.1 Pseudomonas aeruginosa strain Pae_CF67.10q CF67.10q_contig_15, whole genome shotgun sequence

⇒Summary: seq-len = 947525 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 801784-802413 bp Zoom in on locus 1 x11 CRISPR array Location: 801784-802413 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 801784-802413 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 801784-802413 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEIP01000010.1 Pseudomonas aeruginosa strain Pae_CF67.10q CF67.10q_contig_10, whole genome shotgun sequence

⇒Summary: seq-len = 71867 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38135-49881 bp Zoom in on locus 1 x25 x23 CRISPR array Location: 38135-39599 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 38135-39599 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09739:cas6f Type: other Location: 39783-40346 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40350-41378 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41389-42372 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42359-43660 bp Gene: COG1203:cas3 Type: Type-I Location: 44071-47301 bp Gene: cd09718:cas1 Type: universal Location: 47298-48272 bp CRISPR array Location: 48533-49881 bp Num of repeats: 23 Spacers: s25-s46 CRISPR array Location: 48533-49881 bp Num of repeats: 23 Spacers: s25-s46 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38135-39599 bp]: array | spacers
           [Locus range 48533-49881 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)