CRISPRone

CRISPRone report for GCA_001036065.1_ASM103606v1

♦ Seq 1: LEIS01000195.1 Pseudomonas aeruginosa strain Pae_CF67.10t CF67.10t_contig_195, whole genome shotgun sequence

⇒Summary: seq-len = 3637 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3430-3637 bp Zoom in on locus 1 x4 CRISPR array Location: 3430-3637 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3430-3637 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3430-3637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEIS01000008.1 Pseudomonas aeruginosa strain Pae_CF67.10t CF67.10t_contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 67622 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46936-58503 bp Zoom in on locus 1 x23 x22 CRISPR array Location: 46936-48285 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 46936-48285 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 48545-49519 bp Gene: COG1203:cas3 Type: Type-I Location: 49516-52746 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 53157-54458 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 54445-55428 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 55439-56467 bp Gene: cd09739:cas6f Type: other Location: 56471-57034 bp CRISPR array Location: 57219-58503 bp Num of repeats: 22 Spacers: s23-s43 CRISPR array Location: 57219-58503 bp Num of repeats: 22 Spacers: s23-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 46936-48285 bp]: array | spacers
           [Locus range 57219-58503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)