CRISPRone

CRISPRone report for GCA_001036075.1_ASM103607v1

♦ Seq 1: LEIT01000081.1 Pseudomonas aeruginosa strain Pae_CF67.11a CF67.11a_contig_81, whole genome shotgun sequence

⇒Summary: seq-len = 20307 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111-740 bp Zoom in on locus 1 x11 CRISPR array Location: 111-740 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 111-740 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111-740 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEIT01000102.1 Pseudomonas aeruginosa strain Pae_CF67.11a CF67.11a_contig_102, whole genome shotgun sequence

⇒Summary: seq-len = 20368 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8451-20258 bp Zoom in on locus 1 x26 x23 CRISPR array Location: 8451-9976 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 8451-9976 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09739:cas6f Type: other Location: 10160-10723 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 10727-11755 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 11766-12749 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 12736-14037 bp Gene: COG1203:cas3 Type: Type-I Location: 14448-17678 bp Gene: cd09718:cas1 Type: universal Location: 17675-18649 bp CRISPR array Location: 18910-20258 bp Num of repeats: 23 Spacers: s26-s47 CRISPR array Location: 18910-20258 bp Num of repeats: 23 Spacers: s26-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8451-9976 bp]: array | spacers
           [Locus range 18910-20258 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)