CRISPRone

CRISPRone report for GCA_001036305.1_ASM103630v1

♦ Seq 1: LEJE01000166.1 Pseudomonas aeruginosa strain Pae_CF67.12a CF67.12a_contig_166, whole genome shotgun sequence

⇒Summary: seq-len = 909 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-630 bp Zoom in on locus 1 x11 CRISPR array Location: 1-630 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1-630 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-630 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEJE01000033.1 Pseudomonas aeruginosa strain Pae_CF67.12a CF67.12a_contig_33, whole genome shotgun sequence

⇒Summary: seq-len = 50172 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38305-50172 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 38305-39890 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 38305-39890 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 40074-40637 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40641-41669 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41680-42663 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42650-43951 bp Gene: COG1203:cas3 Type: Type-I Location: 44362-47592 bp Gene: cd09718:cas1 Type: universal Location: 47589-48563 bp CRISPR array Location: 48824-50172 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 48824-50172 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38305-39890 bp]: array | spacers
           [Locus range 48824-50172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LEJE01000131.1 Pseudomonas aeruginosa strain Pae_CF67.12a CF67.12a_contig_131, whole genome shotgun sequence

⇒Summary: seq-len = 16925 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3605-11497 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 3605-4276 bp Gene: unk Type: unknown Location: 4289-4939 bp Gene: unk Type: unknown Location: 4948-5088 bp Gene: cls001593:casR Type: Type-I Location: 5604-6269 bp Gene: unk Type: unknown Location: 6279-7142 bp Gene: unk Type: unknown Location: 7144-10644 bp Gene: mkCas0198:csm3gr7 Type: Type-III Location: 10928-11497 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)