CRISPRone

CRISPRone report for GCA_001036315.1_ASM103631v1

♦ Seq 1: LEJF01000498.1 Pseudomonas aeruginosa strain Pae_CF67.12b CF67.12b_contig_498, whole genome shotgun sequence

⇒Summary: seq-len = 10491 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-10491 bp Zoom in on locus 1 x23 x4 CRISPR array Location: 0-1348 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 0-1348 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1608-2582 bp Gene: COG1203:cas3 Type: Type-I Location: 2579-5809 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6405-7523 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7510-8493 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8504-9532 bp Gene: cd09739:cas6f Type: other Location: 9536-10099 bp CRISPR array Location: 10284-10491 bp Num of repeats: 4 Spacers: s23-s25 CRISPR array Location: 10284-10491 bp Num of repeats: 4 Spacers: s23-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-1348 bp]: array | spacers
           [Locus range 10284-10491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEJF01000812.1 Pseudomonas aeruginosa strain Pae_CF67.12b CF67.12b_contig_812, whole genome shotgun sequence

⇒Summary: seq-len = 917 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-930 bp Zoom in on locus 1 x16 CRISPR array Location: 1-930 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1-930 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-930 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)