CRISPRone

CRISPRone report for GCA_001036405.1_ASM103640v1

♦ Seq 1: LEJJ01000055.1 Pseudomonas aeruginosa strain Pae_CF67.11o CF67.11o_contig_55, whole genome shotgun sequence

⇒Summary: seq-len = 40868 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 245-12112 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 245-1594 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 245-1594 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1854-2828 bp Gene: COG1203:cas3 Type: Type-I Location: 2825-6055 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6466-7767 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7754-8737 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8748-9776 bp Gene: cd09739:cas6f Type: other Location: 9780-10343 bp CRISPR array Location: 10528-12112 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 10528-12112 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 245-1594 bp]: array | spacers
           [Locus range 10528-12112 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEJJ01000029.1 Pseudomonas aeruginosa strain Pae_CF67.11o CF67.11o_contig_29, whole genome shotgun sequence

⇒Summary: seq-len = 111894 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111021-111649 bp Zoom in on locus 1 x11 CRISPR array Location: 111021-111649 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 111021-111649 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111021-111649 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)