CRISPRone

CRISPRone report for GCA_001036545.1_ASM103654v1

♦ Seq 1: LEJQ01000045.1 Pseudomonas aeruginosa strain Pae_CF67.12e CF67.12e_contig_45, whole genome shotgun sequence

⇒Summary: seq-len = 28871 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1037 bp Zoom in on locus 1 x18 CRISPR array Location: 0-1037 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 0-1037 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1037 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEJQ01000139.1 Pseudomonas aeruginosa strain Pae_CF67.12e CF67.12e_contig_139, whole genome shotgun sequence

⇒Summary: seq-len = 303 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-314 bp Zoom in on locus 1 x6 CRISPR array Location: 0-314 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-314 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-314 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LEJQ01000063.1 Pseudomonas aeruginosa strain Pae_CF67.12e CF67.12e_contig_63, whole genome shotgun sequence

⇒Summary: seq-len = 48594 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38056-48606 bp Zoom in on locus 1 x23 x5 CRISPR array Location: 38056-39405 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 38056-39405 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 39665-40639 bp Gene: COG1203:cas3 Type: Type-I Location: 40636-43866 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 44277-45578 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 45565-46548 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 46559-47587 bp Gene: cd09739:cas6f Type: other Location: 47591-48154 bp CRISPR array Location: 48339-48606 bp Num of repeats: 5 Spacers: s23-s26 CRISPR array Location: 48339-48606 bp Num of repeats: 5 Spacers: s23-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38056-39405 bp]: array | spacers
           [Locus range 48339-48606 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)