CRISPRone

CRISPRone report for GCA_001036685.1_ASM103668v1

♦ Seq 1: LEJY01000070.1 Pseudomonas aeruginosa strain Pae_CF67.12m CF67.12m_contig_70, whole genome shotgun sequence

⇒Summary: seq-len = 50247 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 246-12113 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 246-1595 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 246-1595 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1855-2829 bp Gene: COG1203:cas3 Type: Type-I Location: 2826-6056 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6467-7768 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7755-8738 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8749-9777 bp Gene: cd09739:cas6f Type: other Location: 9781-10344 bp CRISPR array Location: 10529-12113 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 10529-12113 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 246-1595 bp]: array | spacers
           [Locus range 10529-12113 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEJY01000020.1 Pseudomonas aeruginosa strain Pae_CF67.12m CF67.12m_contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 17973 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17099-17727 bp Zoom in on locus 1 x11 CRISPR array Location: 17099-17727 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 17099-17727 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17099-17727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)