CRISPRone

CRISPRone report for GCA_001036765.1_ASM103676v1

♦ Seq 1: LEKB01000074.1 Pseudomonas aeruginosa strain Pae_CF67.12p CF67.12p_contig_74, whole genome shotgun sequence

⇒Summary: seq-len = 1526 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 549-1527 bp Zoom in on locus 1 x11 x4 CRISPR array Location: 549-1178 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 549-1178 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1323-1527 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 1323-1527 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 549-1178 bp]: array | spacers
           [Locus range 1323-1527 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEKB01000025.1 Pseudomonas aeruginosa strain Pae_CF67.12p CF67.12p_contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 62368 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62281-62368 bp Zoom in on locus 1 x2 CRISPR array Location: 62281-62368 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 62281-62368 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62281-62368 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LEKB01000020.1 Pseudomonas aeruginosa strain Pae_CF67.12p CF67.12p_contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 369691 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 337198-347929 bp Zoom in on locus 1 x8 x23 CRISPR array Location: 337198-337647 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 337198-337647 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 337831-338394 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 338398-339426 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 339437-340420 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 340407-341708 bp Gene: COG1203:cas3 Type: Type-I Location: 342119-345349 bp Gene: cd09718:cas1 Type: universal Location: 345346-346320 bp CRISPR array Location: 346581-347929 bp Num of repeats: 23 Spacers: s8-s29 CRISPR array Location: 346581-347929 bp Num of repeats: 23 Spacers: s8-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 337198-337647 bp]: array | spacers
           [Locus range 346581-347929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LEKB01000075.1 Pseudomonas aeruginosa strain Pae_CF67.12p CF67.12p_contig_75, whole genome shotgun sequence

⇒Summary: seq-len = 245 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-257 bp Zoom in on locus 1 x5 CRISPR array Location: 0-257 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-257 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-257 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)