CRISPRone

CRISPRone report for GCA_001036775.1_ASM103677v1

♦ Seq 1: LEKC01000077.1 Pseudomonas aeruginosa strain Pae_CF67.12q CF67.12q_contig_77, whole genome shotgun sequence

⇒Summary: seq-len = 11999 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-11678 bp Zoom in on locus 1 x24 x23 CRISPR array Location: 0-1396 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 0-1396 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09739:cas6f Type: other Location: 1580-2143 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2147-3175 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3186-4169 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4156-5457 bp Gene: COG1203:cas3 Type: Type-I Location: 5868-9098 bp Gene: cd09718:cas1 Type: universal Location: 9095-10069 bp CRISPR array Location: 10330-11678 bp Num of repeats: 23 Spacers: s24-s45 CRISPR array Location: 10330-11678 bp Num of repeats: 23 Spacers: s24-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-1396 bp]: array | spacers
           [Locus range 10330-11678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEKC01000005.1 Pseudomonas aeruginosa strain Pae_CF67.12q CF67.12q_contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 337586 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 337198-337587 bp Zoom in on locus 1 x7 CRISPR array Location: 337198-337587 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 337198-337587 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 337198-337587 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LEKC01000025.1 Pseudomonas aeruginosa strain Pae_CF67.12q CF67.12q_contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 38342 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-208 bp Zoom in on locus 1 x4 CRISPR array Location: 1-208 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1-208 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-208 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)