CRISPRone

CRISPRone report for GCA_001036825.1_ASM103682v1

♦ Seq 1: LEEV01000016.1 Pseudomonas aeruginosa strain Pae_CF67.05r CF67.05r_contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 408559 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25609-26237 bp Zoom in on locus 1 x11 CRISPR array Location: 25609-26237 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 25609-26237 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25609-26237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEEV01000006.1 Pseudomonas aeruginosa strain Pae_CF67.05r CF67.05r_contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 72006 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22005-33872 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 22005-23354 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 22005-23354 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 23614-24588 bp Gene: COG1203:cas3 Type: Type-I Location: 24585-27815 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28226-29527 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29514-30497 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30508-31536 bp Gene: cd09739:cas6f Type: other Location: 31540-32103 bp CRISPR array Location: 32288-33872 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 32288-33872 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22005-23354 bp]: array | spacers
           [Locus range 32288-33872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)