CRISPRone

CRISPRone report for GCA_001036835.1_ASM103683v1

♦ Seq 1: LEEX01000053.1 Pseudomonas aeruginosa strain Pae_CF67.05t CF67.05t_contig_53, whole genome shotgun sequence

⇒Summary: seq-len = 33021 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-11035 bp Zoom in on locus 1 x13 x23 CRISPR array Location: 0-735 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 0-735 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 919-1482 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1486-2514 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2525-3508 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3495-4796 bp Gene: COG1203:cas3 Type: Type-I Location: 5207-8437 bp Gene: cd09718:cas1 Type: universal Location: 8434-9408 bp CRISPR array Location: 9669-11035 bp Num of repeats: 23 Spacers: s13-s34 CRISPR array Location: 9669-11035 bp Num of repeats: 23 Spacers: s13-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-735 bp]: array | spacers
           [Locus range 9669-11035 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEEX01000029.1 Pseudomonas aeruginosa strain Pae_CF67.05t CF67.05t_contig_29, whole genome shotgun sequence

⇒Summary: seq-len = 101291 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38135-38944 bp Zoom in on locus 1 x14 CRISPR array Location: 38135-38944 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38135-38944 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38135-38944 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LEEX01000007.1 Pseudomonas aeruginosa strain Pae_CF67.05t CF67.05t_contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 402193 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-498 bp Zoom in on locus 1 x9 CRISPR array Location: 0-498 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 0-498 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-498 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)