CRISPRone

CRISPRone report for GCA_001036885.1_ASM103688v1

♦ Seq 1: LEEY01000063.1 Pseudomonas aeruginosa strain Pae_CF67.06a CF67.06a_contig_63, whole genome shotgun sequence

⇒Summary: seq-len = 36362 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24389-36252 bp Zoom in on locus 1 x21 x4 x23 CRISPR array Location: 24389-25614 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 24389-25614 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 25762-25970 bp Num of repeats: 4 Spacers: s21-s23 CRISPR array Location: 25762-25970 bp Num of repeats: 4 Spacers: s21-s23 Gene: cd09739:cas6f Type: other Location: 26154-26717 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 26721-27749 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27760-28743 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28730-30031 bp Gene: COG1203:cas3 Type: Type-I Location: 30442-33672 bp Gene: cd09718:cas1 Type: universal Location: 33669-34643 bp CRISPR array Location: 34904-36252 bp Num of repeats: 23 Spacers: s24-s45 CRISPR array Location: 34904-36252 bp Num of repeats: 23 Spacers: s24-s45 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 24389-25614 bp]: array | spacers
           [Locus range 25762-25970 bp]: array | spacers
           [Locus range 34904-36252 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEEY01000002.1 Pseudomonas aeruginosa strain Pae_CF67.06a CF67.06a_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 120964 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120226-120854 bp Zoom in on locus 1 x11 CRISPR array Location: 120226-120854 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 120226-120854 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120226-120854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)