CRISPRone

CRISPRone report for GCA_001036895.1_ASM103689v1

♦ Seq 1: LEFA01000004.1 Pseudomonas aeruginosa strain Pae_CF67.06c CF67.06c_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 111780 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111042-111670 bp Zoom in on locus 1 x11 CRISPR array Location: 111042-111670 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 111042-111670 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111042-111670 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEFA01000082.1 Pseudomonas aeruginosa strain Pae_CF67.06c CF67.06c_contig_82, whole genome shotgun sequence

⇒Summary: seq-len = 16570 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3817-15684 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 3817-5402 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 3817-5402 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 5586-6149 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6153-7181 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7192-8175 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 8162-9463 bp Gene: COG1203:cas3 Type: Type-I Location: 9874-13104 bp Gene: cd09718:cas1 Type: universal Location: 13101-14075 bp CRISPR array Location: 14336-15684 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 14336-15684 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3817-5402 bp]: array | spacers
           [Locus range 14336-15684 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)