CRISPRone

CRISPRone report for GCA_001037045.1_ASM103704v1

♦ Seq 1: LEFI01000081.1 Pseudomonas aeruginosa strain Pae_CF67.06l CF67.06l_contig_81, whole genome shotgun sequence

⇒Summary: seq-len = 51620 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38974-50781 bp Zoom in on locus 1 x26 x23 CRISPR array Location: 38974-40499 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 38974-40499 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09739:cas6f Type: other Location: 40683-41246 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 41250-42278 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 42289-43272 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 43259-44560 bp Gene: COG1203:cas3 Type: Type-I Location: 44971-48201 bp Gene: cd09718:cas1 Type: universal Location: 48198-49172 bp CRISPR array Location: 49433-50781 bp Num of repeats: 23 Spacers: s26-s47 CRISPR array Location: 49433-50781 bp Num of repeats: 23 Spacers: s26-s47 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38974-40499 bp]: array | spacers
           [Locus range 49433-50781 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEFI01000060.1 Pseudomonas aeruginosa strain Pae_CF67.06l CF67.06l_contig_60, whole genome shotgun sequence

⇒Summary: seq-len = 6953 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6215-6843 bp Zoom in on locus 1 x11 CRISPR array Location: 6215-6843 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 6215-6843 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6215-6843 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)