CRISPRone

CRISPRone report for GCA_001037055.1_ASM103705v1

♦ Seq 1: LEFJ01000033.1 Pseudomonas aeruginosa strain Pae_CF67.06m CF67.06m_contig_33, whole genome shotgun sequence

⇒Summary: seq-len = 31976 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-10671 bp Zoom in on locus 1 x7 x23 CRISPR array Location: 1-389 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1-389 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09739:cas6f Type: other Location: 573-1136 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1140-2168 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2179-3162 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3149-4450 bp Gene: COG1203:cas3 Type: Type-I Location: 4861-8091 bp Gene: cd09718:cas1 Type: universal Location: 8088-9062 bp CRISPR array Location: 9323-10671 bp Num of repeats: 23 Spacers: s7-s28 CRISPR array Location: 9323-10671 bp Num of repeats: 23 Spacers: s7-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-389 bp]: array | spacers
           [Locus range 9323-10671 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEFJ01000146.1 Pseudomonas aeruginosa strain Pae_CF67.06m CF67.06m_contig_146, whole genome shotgun sequence

⇒Summary: seq-len = 316 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-316 bp Zoom in on locus 1 x6 CRISPR array Location: 0-316 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-316 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-316 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)