CRISPRone

CRISPRone report for GCA_001037125.1_ASM103712v1

♦ Seq 1: LEFO01000150.1 Pseudomonas aeruginosa strain Pae_CF67.06r CF67.06r_contig_150, whole genome shotgun sequence

⇒Summary: seq-len = 15292 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3477-15292 bp Zoom in on locus 1 x26 x23 CRISPR array Location: 3477-5002 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 3477-5002 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09739:cas6f Type: other Location: 5186-5749 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 5753-6781 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6792-7775 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7762-8880 bp Gene: COG1203:cas3 Type: Type-I Location: 9482-12712 bp Gene: cd09718:cas1 Type: universal Location: 12709-13683 bp CRISPR array Location: 13944-15292 bp Num of repeats: 23 Spacers: s26-s47 CRISPR array Location: 13944-15292 bp Num of repeats: 23 Spacers: s26-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3477-5002 bp]: array | spacers
           [Locus range 13944-15292 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEFO01000169.1 Pseudomonas aeruginosa strain Pae_CF67.06r CF67.06r_contig_169, whole genome shotgun sequence

⇒Summary: seq-len = 909 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-630 bp Zoom in on locus 1 x11 CRISPR array Location: 1-630 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1-630 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-630 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)