CRISPRone

CRISPRone report for GCA_001037395.1_ASM103739v1

♦ Seq 1: LEGK01000052.1 Pseudomonas aeruginosa strain Pae_CF67.07t CF67.07t_contig_52, whole genome shotgun sequence

⇒Summary: seq-len = 112427 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111025-111773 bp Zoom in on locus 1 x13 CRISPR array Location: 111025-111773 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 111025-111773 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111025-111773 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LEGK01000038.1 Pseudomonas aeruginosa strain Pae_CF67.07t CF67.07t_contig_38, whole genome shotgun sequence

⇒Summary: seq-len = 123143 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112428-123154 bp Zoom in on locus 1 x23 x8 CRISPR array Location: 112428-113777 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 112428-113777 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 114037-115011 bp Gene: COG1203:cas3 Type: Type-I Location: 115008-118238 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 118649-119950 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 119937-120920 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 120931-121959 bp Gene: cd09739:cas6f Type: other Location: 121963-122526 bp CRISPR array Location: 122711-123154 bp Num of repeats: 8 Spacers: s23-s29 CRISPR array Location: 122711-123154 bp Num of repeats: 8 Spacers: s23-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 112428-113777 bp]: array | spacers
           [Locus range 122711-123154 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)