CRISPRone

CRISPRone report for GCA_001042925.1_G1273

♦ Seq 1: JYLC01000008.1 Pseudomonas aeruginosa strain DSM 50071 8_244208_17.9929, whole genome shotgun sequence

⇒Summary: seq-len = 244208 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53090-63589 bp Zoom in on locus 1 x17 x16 CRISPR array Location: 53090-54079 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 53090-54079 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 54261-54824 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 54828-55856 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 55867-56850 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 56837-58141 bp Gene: COG1203:cas3 Type: Type-I Location: 58199-61429 bp Gene: cd09718:cas1 Type: universal Location: 61426-62400 bp CRISPR array Location: 62662-63589 bp Num of repeats: 16 Spacers: s17-s31 CRISPR array Location: 62662-63589 bp Num of repeats: 16 Spacers: s17-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53090-54079 bp]: array | spacers
           [Locus range 62662-63589 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JYLC01000004.1 Pseudomonas aeruginosa strain DSM 50071 4_721732_20.5851, whole genome shotgun sequence

⇒Summary: seq-len = 721732 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 496629-497437 bp Zoom in on locus 1 x14 CRISPR array Location: 496629-497437 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 496629-497437 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 496629-497437 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)