CRISPRone

CRISPRone report for GCA_001054865.1_ASM105486v1

♦ Seq 1: JVLR01000071.1 Bacteroides fragilis strain 320_BFRA 802_1219_36062_275+,...,534+, whole genome shotgun sequence

⇒Summary: seq-len = 1219 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 76-200 bp Zoom in on locus 1 x2 CRISPR array Location: 76-200 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 76-200 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 76-200 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JVLR01000051.1 Bacteroides fragilis strain 320_BFRA 782_46258_1021972_150+,548_, whole genome shotgun sequence

⇒Summary: seq-len = 46258 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19610-28786 bp Zoom in on locus 1 x21 CRISPR array Location: 19610-20925 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 19610-20925 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 21138-21401 bp Gene: cd09722:cas1 Type: universal Location: 21404-22417 bp Gene: pfam01930:cas4 Type: Type-I Location: 22414-22926 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 22991-24049 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 24062-25387 bp Gene: COG1203:cas3 Type: Type-I Location: 25391-27550 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 27540-28103 bp Gene: cd09652:cas6 Type: other Location: 28115-28786 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19610-20925 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JVLR01000108.1 Bacteroides fragilis strain 320_BFRA 839_119543_2723992_576_,...,654_, whole genome shotgun sequence

⇒Summary: seq-len = 119543 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4-7269 bp Zoom in on locus 1 x6 CRISPR array Location: 4-433 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4-433 bp Num of repeats: 6 Spacers: s1-s5 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 543-875 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 879-1811 bp Gene: unk Type: unknown Location: 1931-2239 bp Gene: unk Type: unknown Location: 2306-2830 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 2846-7156 bp antiRepeat Location: 7224-7269 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4-433 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JVLR01000107.1 Bacteroides fragilis strain 320_BFRA 838_127270_3465681_574+,...,222+, whole genome shotgun sequence

⇒Summary: seq-len = 127270 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10073-13686 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 10073-10972 bp Gene: unk Type: unknown Location: 10969-12234 bp Gene: unk Type: unknown Location: 12242-13015 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 13018-13686 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)