CRISPRone

CRISPRone report for GCA_001054895.1_ASM105489v1

♦ Seq 1: JVLP01000025.1 Bacteroides fragilis strain 322_BFRA 116_45895_672116, whole genome shotgun sequence

⇒Summary: seq-len = 45895 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19610-28786 bp Zoom in on locus 1 x21 CRISPR array Location: 19610-20925 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 19610-20925 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 21138-21401 bp Gene: cd09722:cas1 Type: universal Location: 21404-22417 bp Gene: pfam01930:cas4 Type: Type-I Location: 22414-22926 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 22991-24049 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 24062-25387 bp Gene: COG1203:cas3 Type: Type-I Location: 25391-27550 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 27540-28103 bp Gene: cd09652:cas6 Type: other Location: 28115-28786 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19610-20925 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JVLP01000098.1 Bacteroides fragilis strain 322_BFRA 616_979_15511, whole genome shotgun sequence

⇒Summary: seq-len = 979 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 855-978 bp Zoom in on locus 1 x2 CRISPR array Location: 855-978 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 855-978 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 855-978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JVLP01000149.1 Bacteroides fragilis strain 322_BFRA 770_64090_976435_308+,...,547+, whole genome shotgun sequence

⇒Summary: seq-len = 64090 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56935-64088 bp Zoom in on locus 1 x6 Gene: cd09643:cas9 Type: Subtype-II-C Location: 56935-61245 bp Gene: unk Type: unknown Location: 61261-61785 bp Gene: unk Type: unknown Location: 61852-62160 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 62280-63212 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 63216-63548 bp CRISPR array Location: 63658-64088 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 63658-64088 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63658-64088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JVLP01000177.1 Bacteroides fragilis strain 322_BFRA 798_85381_1262731_674+,...,544_, whole genome shotgun sequence

⇒Summary: seq-len = 85381 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71696-75309 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 71696-72364 bp Gene: unk Type: unknown Location: 72367-73140 bp Gene: unk Type: unknown Location: 73148-74413 bp Gene: pfam13280:WYL Type: other Location: 74410-75309 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)