CRISPRone

CRISPRone report for GCA_001060735.1_ASM106073v1

♦ Seq 1: JVWG01000127.1 Pseudomonas aeruginosa strain 1268_PAER 872_2074_205873_114_,623+,825+, whole genome shotgun sequence

⇒Summary: seq-len = 2074 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1120-1267 bp Zoom in on locus 1 x3 CRISPR array Location: 1120-1267 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1120-1267 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1120-1267 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JVWG01000155.1 Pseudomonas aeruginosa strain 1268_PAER 900_37375_682370_324+,114_, whole genome shotgun sequence

⇒Summary: seq-len = 37375 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25814-36233 bp Zoom in on locus 1 x19 x7 CRISPR array Location: 25814-26922 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 25814-26922 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 27105-27668 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27672-28700 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28711-29694 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29681-30982 bp Gene: COG1203:cas3 Type: Type-I Location: 31393-34623 bp Gene: cd09718:cas1 Type: universal Location: 34620-35594 bp CRISPR array Location: 35846-36233 bp Num of repeats: 7 Spacers: s19-s24 CRISPR array Location: 35846-36233 bp Num of repeats: 7 Spacers: s19-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25814-26922 bp]: array | spacers
           [Locus range 35846-36233 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JVWG01000165.1 Pseudomonas aeruginosa strain 1268_PAER 910_2092_51702_424+,825+, whole genome shotgun sequence

⇒Summary: seq-len = 2092 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 537-1285 bp Zoom in on locus 1 x13 CRISPR array Location: 537-1285 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 537-1285 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 537-1285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)