CRISPRone

CRISPRone report for GCA_001061475.1_ASM106147v1

♦ Seq 1: JVUW01000105.1 Pseudomonas aeruginosa strain 130_PAER 1042_36925_645915_828_,666+,734+, whole genome shotgun sequence

⇒Summary: seq-len = 36925 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36334-36842 bp Zoom in on locus 1 x9 CRISPR array Location: 36334-36842 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 36334-36842 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36334-36842 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JVUW01000134.1 Pseudomonas aeruginosa strain 130_PAER 1072_11766_274569_931+,...,347+, whole genome shotgun sequence

⇒Summary: seq-len = 11766 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 339-10667 bp Zoom in on locus 1 x8 x21 CRISPR array Location: 339-788 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 339-788 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 1037-1600 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1604-2632 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2643-3626 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3613-4917 bp Gene: COG1203:cas3 Type: Type-I Location: 4975-8205 bp Gene: cd09718:cas1 Type: universal Location: 8202-9176 bp CRISPR array Location: 9437-10667 bp Num of repeats: 21 Spacers: s8-s27 CRISPR array Location: 9437-10667 bp Num of repeats: 21 Spacers: s8-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 339-788 bp]: array | spacers
           [Locus range 9437-10667 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JVUW01000086.1 Pseudomonas aeruginosa strain 130_PAER 1022_243044_5026869_684+,...,562+, whole genome shotgun sequence

⇒Summary: seq-len = 243116 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 193390-195597 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 193390-193797 bp Gene: unk Type: unknown Location: 193831-194517 bp Gene: COG2378:WYL Type: other Location: 194626-195597 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)