CRISPRone

CRISPRone report for GCA_001061585.1_ASM106158v1

♦ Seq 1: JVTQ01000185.1 Pseudomonas aeruginosa strain 1324_PAER 579_10927_129847, whole genome shotgun sequence

⇒Summary: seq-len = 10927 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 838-10922 bp Zoom in on locus 1 x19 x6 CRISPR array Location: 838-1946 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 838-1946 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 2206-3180 bp Gene: COG1203:cas3 Type: Type-I Location: 3177-6407 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6465-7769 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7756-8739 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8750-9778 bp Gene: cd09739:cas6f Type: other Location: 9782-10345 bp CRISPR array Location: 10595-10922 bp Num of repeats: 6 Spacers: s19-s23 CRISPR array Location: 10595-10922 bp Num of repeats: 6 Spacers: s19-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 838-1946 bp]: array | spacers
           [Locus range 10595-10922 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JVTQ01000074.1 Pseudomonas aeruginosa strain 1324_PAER 219_2119_22293, whole genome shotgun sequence

⇒Summary: seq-len = 2119 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-88 bp Zoom in on locus 1 x2 CRISPR array Location: 1-88 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1-88 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-88 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JVTQ01000373.1 Pseudomonas aeruginosa strain 1324_PAER 1169_333_5078, whole genome shotgun sequence

⇒Summary: seq-len = 333 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-328 bp Zoom in on locus 1 x6 CRISPR array Location: 1-328 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1-328 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-328 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)