CRISPRone

CRISPRone report for GCA_001062565.1_ASM106256v1

♦ Seq 1: JVWH01000138.1 Pseudomonas aeruginosa strain 1267_PMEN 600_23236_276956, whole genome shotgun sequence

⇒Summary: seq-len = 23236 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12749-23168 bp Zoom in on locus 1 x19 x7 CRISPR array Location: 12749-13857 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 12749-13857 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 14040-14603 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 14607-15635 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 15646-16629 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 16616-17917 bp Gene: COG1203:cas3 Type: Type-I Location: 18328-21558 bp Gene: cd09718:cas1 Type: universal Location: 21555-22529 bp CRISPR array Location: 22781-23168 bp Num of repeats: 7 Spacers: s19-s24 CRISPR array Location: 22781-23168 bp Num of repeats: 7 Spacers: s19-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12749-13857 bp]: array | spacers
           [Locus range 22781-23168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JVWH01000064.1 Pseudomonas aeruginosa strain 1267_PMEN 268_291_3085, whole genome shotgun sequence

⇒Summary: seq-len = 291 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46-193 bp Zoom in on locus 1 x3 CRISPR array Location: 46-193 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 46-193 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46-193 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JVWH01000119.1 Pseudomonas aeruginosa strain 1267_PMEN 524_1377_20179, whole genome shotgun sequence

⇒Summary: seq-len = 1377 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 531-1279 bp Zoom in on locus 1 x13 CRISPR array Location: 531-1279 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 531-1279 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 531-1279 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)