CRISPRone

CRISPRone report for GCA_001063005.1_ASM106300v1

♦ Seq 1: JVPC01000012.1 Pseudomonas aeruginosa strain 231_PPRO 1496_112537_3215438_277_,...,1470+, whole genome shotgun sequence

⇒Summary: seq-len = 112537 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111062-111690 bp Zoom in on locus 1 x11 CRISPR array Location: 111062-111690 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 111062-111690 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111062-111690 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JVPC01000101.1 Pseudomonas aeruginosa strain 231_PPRO 1599_50921_1169859_1470_,...,655_, whole genome shotgun sequence

⇒Summary: seq-len = 50921 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 848-12775 bp Zoom in on locus 1 x23 x28 CRISPR array Location: 848-2197 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 848-2197 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 2457-3431 bp Gene: COG1203:cas3 Type: Type-I Location: 3428-6658 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7069-8370 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8357-9340 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9351-10379 bp Gene: cd09739:cas6f Type: other Location: 10383-10946 bp CRISPR array Location: 11131-12775 bp Num of repeats: 28 Spacers: s23-s49 CRISPR array Location: 11131-12775 bp Num of repeats: 28 Spacers: s23-s49 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 848-2197 bp]: array | spacers
           [Locus range 11131-12775 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)