CRISPRone

CRISPRone report for GCA_001063795.1_ASM106379v1

♦ Seq 1: JVBJ01000122.1 Pseudomonas aeruginosa strain 577_PAER 221_5906_64163, whole genome shotgun sequence

⇒Summary: seq-len = 5906 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3361-4061 bp Zoom in on locus 1 x12 CRISPR array Location: 3361-4061 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 3361-4061 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3361-4061 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JVBJ01000028.1 Pseudomonas aeruginosa strain 577_PAER 46_11738_129824, whole genome shotgun sequence

⇒Summary: seq-len = 11738 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-8095 bp Zoom in on locus 1 x13 Gene: cd09639:cas3 Type: Type-I Location: 2-1555 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 1558-3126 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3123-3653 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3663-4805 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4807-5469 bp Gene: pfam08798:cas6e Type: other Location: 5444-6055 bp Gene: COG1518:cas1 Type: universal Location: 6082-6516 bp Gene: COG1518:cas1 Type: universal Location: 6523-6972 bp Gene: pfam09707:cas2 Type: universal Location: 6969-7268 bp CRISPR array Location: 7333-8095 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 7333-8095 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7333-8095 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)