CRISPRone

CRISPRone report for GCA_001067795.1_ASM106779v1

♦ Seq 1: JUKS01000002.1 Pseudomonas aeruginosa strain 991.rep1_PAER 12_7134_110676, whole genome shotgun sequence

⇒Summary: seq-len = 7134 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135-884 bp Zoom in on locus 1 x13 CRISPR array Location: 135-884 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 135-884 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135-884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JUKS01000273.1 Pseudomonas aeruginosa strain 991.rep1_PAER 620_48809_629845, whole genome shotgun sequence

⇒Summary: seq-len = 48809 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135-12182 bp Zoom in on locus 1 x25 x28 CRISPR array Location: 135-1604 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 135-1604 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09718:cas1 Type: universal Location: 1864-2838 bp Gene: COG1203:cas3 Type: Type-I Location: 2835-6065 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6476-7777 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7764-8747 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8758-9786 bp Gene: cd09739:cas6f Type: other Location: 9790-10353 bp CRISPR array Location: 10538-12182 bp Num of repeats: 28 Spacers: s25-s51 CRISPR array Location: 10538-12182 bp Num of repeats: 28 Spacers: s25-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 135-1604 bp]: array | spacers
           [Locus range 10538-12182 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)