CRISPRone

CRISPRone report for GCA_001067875.1_ASM106787v1

♦ Seq 1: JUOD01000142.1 Pseudomonas aeruginosa strain 913_PAER 296_893_14415, whole genome shotgun sequence

⇒Summary: seq-len = 893 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90-358 bp Zoom in on locus 1 x5 CRISPR array Location: 90-358 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 90-358 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90-358 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JUOD01000149.1 Pseudomonas aeruginosa strain 913_PAER 313_42101_473788, whole genome shotgun sequence

⇒Summary: seq-len = 42101 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31398-41997 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 31398-32506 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 31398-32506 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 32689-33252 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 33256-34284 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 34295-35278 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 35265-36566 bp Gene: COG1203:cas3 Type: Type-I Location: 36977-40207 bp Gene: cd09718:cas1 Type: universal Location: 40204-41178 bp CRISPR array Location: 41430-41997 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 41430-41997 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31398-32506 bp]: array | spacers
           [Locus range 41430-41997 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JUOD01000227.1 Pseudomonas aeruginosa strain 913_PAER 499_589_11374, whole genome shotgun sequence

⇒Summary: seq-len = 589 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105-494 bp Zoom in on locus 1 x7 CRISPR array Location: 105-494 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 105-494 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 105-494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)