CRISPRone

CRISPRone report for GCA_001076855.1_ASM107685v1

♦ Seq 1: JVET01000117.1 Pseudomonas aeruginosa strain 499_PAER 2126_48944_539541_1270+,...,630+, whole genome shotgun sequence

⇒Summary: seq-len = 48994 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38316-48906 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 38316-39424 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38316-39424 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 39607-40170 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40174-41202 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41213-42196 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42183-43484 bp Gene: COG1203:cas3 Type: Type-I Location: 43895-47116 bp Gene: cd09718:cas1 Type: universal Location: 47113-48087 bp CRISPR array Location: 48339-48906 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 48339-48906 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38316-39424 bp]: array | spacers
           [Locus range 48339-48906 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JVET01000127.1 Pseudomonas aeruginosa strain 499_PAER 2137_1425_21611_1400+,...,705+, whole genome shotgun sequence

⇒Summary: seq-len = 1425 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89-838 bp Zoom in on locus 1 x13 CRISPR array Location: 89-838 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 89-838 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 89-838 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)