CRISPRone

CRISPRone report for GCA_001077535.2_ASM107753v2

♦ Seq 1: CP011968.1 Clostridioides difficile ATCC 9689 = DSM 1296 chromosome, complete genome

⇒Summary: seq-len = 4109692 bp; # of CRISPR array = 7; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 297148-297572 bp 2 Locus 2: 1534344-1535228 bp 3 Locus 3: 1645555-1646047 bp 4 Locus 4: 1819621-1820769 bp 5 Locus 5: 2518094-2518515 bp 6 Locus 6: 2684041-2691906 bp 7 Locus 7: 2765189-2765750 bp 8 Locus 8: 3263096-3273209 bp Zoom in on locus 1 x7 Zoom in on locus 2 x14 Zoom in on locus 3 x8 Zoom in on locus 4 x18 Zoom in on locus 5 x7 Zoom in on locus 6 Zoom in on locus 7 x9 Zoom in on locus 8 x9 CRISPR array Location: 297148-297572 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 297148-297572 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1534344-1535228 bp Num of repeats: 14 Spacers: s7-s19 CRISPR array Location: 1534344-1535228 bp Num of repeats: 14 Spacers: s7-s19 CRISPR array Location: 1645555-1646047 bp Num of repeats: 8 Spacers: s20-s26 CRISPR array Location: 1645555-1646047 bp Num of repeats: 8 Spacers: s20-s26 CRISPR array Location: 1819621-1820769 bp Num of repeats: 18 Spacers: s27-s43 CRISPR array Location: 1819621-1820769 bp Num of repeats: 18 Spacers: s27-s43 CRISPR array Location: 2518094-2518515 bp Num of repeats: 7 Spacers: s44-s49 CRISPR array Location: 2518094-2518515 bp Num of repeats: 7 Spacers: s44-s49 Gene: cd09641:cas3HD Type: Type-I Location: 2684041-2686449 bp Gene: cd09693:cas5 Type: Type-I Location: 2686476-2687273 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2687289-2688302 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2688322-2689797 bp Gene: pfam01881:cas6 Type: other Location: 2689802-2690539 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2690797-2691906 bp CRISPR array Location: 2765189-2765750 bp Num of repeats: 9 Spacers: s50-s57 CRISPR array Location: 2765189-2765750 bp Num of repeats: 9 Spacers: s50-s57 CRISPR array Location: 3263096-3263644 bp Num of repeats: 9 Spacers: s58-s65 CRISPR array Location: 3263096-3263644 bp Num of repeats: 9 Spacers: s58-s65 Gene: cd09725:cas2 Type: universal Location: 3263828-3264094 bp Gene: cd09722:cas1 Type: universal Location: 3264097-3265077 bp Gene: pfam01930:cas4 Type: Type-I Location: 3265161-3265598 bp Gene: COG1203:cas3 Type: Type-I Location: 3265646-3267967 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3267978-3268679 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3268681-3269595 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3269597-3271474 bp Gene: pfam01881:cas6 Type: other Location: 3271480-3272274 bp Gene: pfam13280:WYL Type: other Location: 3272295-3273209 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 297148-297572 bp]: array | spacers
           [Locus range 1534344-1535228 bp]: array | spacers
           [Locus range 1645555-1646047 bp]: array | spacers
           [Locus range 1819621-1820769 bp]: array | spacers
           [Locus range 2518094-2518515 bp]: array | spacers
           [Locus range 2765189-2765750 bp]: array | spacers
           [Locus range 3263096-3263644 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)