CRISPRone

CRISPRone report for GCA_001263655.1_ASM126365v1

♦ Seq 1: BBYC01000110.1 Peptoclostridium difficile DNA, contig: contig110, strain: KY64, whole genome shotgun sequence

⇒Summary: seq-len = 55971 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10473-11231 bp Zoom in on locus 1 x12 CRISPR array Location: 10473-11231 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 10473-11231 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10473-11231 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BBYC01000002.1 Peptoclostridium difficile DNA, contig: contig002, strain: KY64, whole genome shotgun sequence

⇒Summary: seq-len = 147122 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139223-139448 bp Zoom in on locus 1 x4 CRISPR array Location: 139223-139448 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 139223-139448 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 139223-139448 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BBYC01000141.1 Peptoclostridium difficile DNA, contig: contig141, strain: KY64, whole genome shotgun sequence

⇒Summary: seq-len = 239035 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18162-19901 bp 2 Locus 2: 158048-159891 bp Zoom in on locus 1 x27 Zoom in on locus 2 x13 x7 CRISPR array Location: 18162-19901 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 18162-19901 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 158048-158865 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 158048-158865 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 159468-159891 bp Num of repeats: 7 Spacers: s39-s44 CRISPR array Location: 159468-159891 bp Num of repeats: 7 Spacers: s39-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18162-19901 bp]: array | spacers
           [Locus range 158048-158865 bp]: array | spacers
           [Locus range 159468-159891 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BBYC01000081.1 Peptoclostridium difficile DNA, contig: contig081, strain: KY64, whole genome shotgun sequence

⇒Summary: seq-len = 398318 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7975-8396 bp 2 Locus 2: 211931-212357 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 CRISPR array Location: 7975-8396 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 7975-8396 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 211931-212357 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 211931-212357 bp Num of repeats: 7 Spacers: s7-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7975-8396 bp]: array | spacers
           [Locus range 211931-212357 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BBYC01000008.1 Peptoclostridium difficile DNA, contig: contig008, strain: KY64, whole genome shotgun sequence

⇒Summary: seq-len = 251695 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15053-15147 bp Zoom in on locus 1 x2 CRISPR array Location: 15053-15147 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 15053-15147 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15053-15147 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BBYC01000125.1 Peptoclostridium difficile DNA, contig: contig125, strain: KY64, whole genome shotgun sequence

⇒Summary: seq-len = 655350 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166383-166609 bp 2 Locus 2: 332366-340231 bp 3 Locus 3: 414452-415008 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 166383-166609 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 166383-166609 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09641:cas3HD Type: Type-I Location: 332366-334774 bp Gene: cd09693:cas5 Type: Type-I Location: 334801-335598 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 335614-336627 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 336647-338122 bp Gene: pfam01881:cas6 Type: other Location: 338127-338864 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 339122-340231 bp CRISPR array Location: 414452-415008 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 414452-415008 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166383-166609 bp]: array | spacers
           [Locus range 414452-415008 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)