CRISPRone

CRISPRone report for GCA_001295275.1_ASM129527v1

♦ Seq 1: LJJO01000074.1 Pseudomonas aeruginosa strain PASS2 contig_90, whole genome shotgun sequence

⇒Summary: seq-len = 57276 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109-497 bp Zoom in on locus 1 x7 CRISPR array Location: 109-497 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 109-497 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 109-497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LJJO01000055.1 Pseudomonas aeruginosa strain PASS2 contig_62, whole genome shotgun sequence

⇒Summary: seq-len = 50379 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109-11736 bp Zoom in on locus 1 x25 x21 CRISPR array Location: 109-1578 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 109-1578 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09718:cas1 Type: universal Location: 1838-2812 bp Gene: COG1203:cas3 Type: Type-I Location: 2809-6039 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6450-7751 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7738-8721 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8732-9760 bp Gene: cd09739:cas6f Type: other Location: 9764-10327 bp CRISPR array Location: 10512-11736 bp Num of repeats: 21 Spacers: s25-s44 CRISPR array Location: 10512-11736 bp Num of repeats: 21 Spacers: s25-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 109-1578 bp]: array | spacers
           [Locus range 10512-11736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)