CRISPRone

CRISPRone report for GCA_001299495.1_ASM129949v1

♦ Seq 1: JPPA01000078.1 Clostridioides difficile strain RA09-70 LOCUS_78, whole genome shotgun sequence

⇒Summary: seq-len = 82653 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38125-49142 bp Zoom in on locus 1 Gene: cd06127:DEDDh Type: Type-I Location: 38125-38631 bp Gene: unk Type: unknown Location: 38790-39458 bp Gene: unk Type: unknown Location: 39872-40378 bp Gene: cd06127:DEDDh Type: Type-I Location: 40802-41848 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 48657-49142 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JPPA01000066.1 Clostridioides difficile strain RA09-70 LOCUS_66, whole genome shotgun sequence

⇒Summary: seq-len = 302407 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104703-105715 bp Zoom in on locus 1 x11 x4 CRISPR array Location: 104703-105387 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 104703-105387 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 105490-105715 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 105490-105715 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104703-105387 bp]: array | spacers
           [Locus range 105490-105715 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JPPA01000047.1 Clostridioides difficile strain RA09-70 LOCUS_47, whole genome shotgun sequence

⇒Summary: seq-len = 15216 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4976-9622 bp Zoom in on locus 1 x11 x5 x5 CRISPR array Location: 4976-5668 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 4976-5668 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 7417-7708 bp Num of repeats: 5 Spacers: s11-s14 CRISPR array Location: 7417-7708 bp Num of repeats: 5 Spacers: s11-s14 CRISPR array Location: 9329-9622 bp Num of repeats: 5 Spacers: s15-s18 CRISPR array Location: 9329-9622 bp Num of repeats: 5 Spacers: s15-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4976-5668 bp]: array | spacers
           [Locus range 7417-7708 bp]: array | spacers
           [Locus range 9329-9622 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JPPA01000059.1 Clostridioides difficile strain RA09-70 LOCUS_59, whole genome shotgun sequence

⇒Summary: seq-len = 51257 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43753-46215 bp Zoom in on locus 1 x38 CRISPR array Location: 43753-46215 bp Num of repeats: 38 Spacers: s1-s37 CRISPR array Location: 43753-46215 bp Num of repeats: 38 Spacers: s1-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43753-46215 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JPPA01000048.1 Clostridioides difficile strain RA09-70 LOCUS_48, whole genome shotgun sequence

⇒Summary: seq-len = 13044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7497-7790 bp Zoom in on locus 1 x5 CRISPR array Location: 7497-7790 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 7497-7790 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7497-7790 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JPPA01000086.1 Clostridioides difficile strain RA09-70 LOCUS_86, whole genome shotgun sequence

⇒Summary: seq-len = 268095 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158528-169993 bp Zoom in on locus 1 x29 CRISPR array Location: 158528-160397 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 158528-160397 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09725:cas2 Type: universal Location: 160581-160847 bp Gene: cd09722:cas1 Type: universal Location: 160851-161831 bp Gene: pfam01930:cas4 Type: Type-I Location: 161834-162352 bp Gene: COG1203:cas3 Type: Type-I Location: 162400-164721 bp Gene: cd09693:cas5 Type: Type-I Location: 164732-165433 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165435-166349 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 166351-168219 bp Gene: pfam01881:cas6 Type: other Location: 168225-169019 bp Gene: pfam13280:WYL Type: other Location: 169040-169993 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 158528-160397 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)